Genome-wide expression analysis suggests glutaredoxin genes response to various stresses in cotton.
Identifieur interne : 000073 ( Main/Exploration ); précédent : 000072; suivant : 000074Genome-wide expression analysis suggests glutaredoxin genes response to various stresses in cotton.
Auteurs : Waqar Afzal Malik [République populaire de Chine] ; Xiaoge Wang [République populaire de Chine] ; Xinlei Wang [République populaire de Chine] ; Na Shu [République populaire de Chine] ; Ruifeng Cui [République populaire de Chine] ; Xiugui Chen [République populaire de Chine] ; Delong Wang [République populaire de Chine] ; Xuke Lu [République populaire de Chine] ; Zujun Yin [République populaire de Chine] ; Junjuan Wang [République populaire de Chine] ; Wuwei Ye [République populaire de Chine]Source :
- International journal of biological macromolecules [ 1879-0003 ] ; 2020.
Abstract
Oxidative stress reflects an imbalance between the systemic manifestation of reactive oxygen species (ROS) and a biological system's ability to readily detoxify the reactive intermediates or to repair the resulting damage. Glutaredoxins (GRXs) are ubiquitous oxidoreductase enzymes involved in diverse cellular processes and play a key role in oxidative stress responsive mechanisms. This study was aimed to explore the structure-function relationship and to provide a framework for functional validation and biochemical characterization of various GRX members. In this study, our analysis revealed the presence of 127 genes encoding GRX proteins in G. hirsutum. A total of 758 genes from two typical monocot and nine dicot species were naturally divided into four classes based on phylogenetic analysis. The classification was supported with organization of conserved protein motifs and sequence logos comparison between cotton, rice and Arabidopsis. Cotton GRX gene family has underwent strong purifying selection with limited functional divergence. A good collinearity was observed in the synteny analysis of four Gossypium species. Majority of cotton GRXs were influenced by various phytohormones and abiotic stress conditions during expression analysis, suggesting an important role of GRX proteins in response to oxidative stress. Cis-regulatory elements, gene enrichments and co-expression network analysis also support their predicted role against various abiotic stresses. Whole genome and segmental duplication were determined to be the two major impetuses for the expansion of gene numbers during the evolution. The identification of GRX genes showing differential expression in specific tissues or in response to environmental stimuli provides a new avenue for in-depth characterization of selected genes of importance. This study will further broaden our insights into the evolution and functional elucidation of GRX gene family in cotton.
DOI: 10.1016/j.ijbiomac.2020.03.021
PubMed: 32145231
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome-wide expression analysis suggests glutaredoxin genes response to various stresses in cotton.</title><author><name sortKey="Malik, Waqar Afzal" sort="Malik, Waqar Afzal" uniqKey="Malik W" first="Waqar Afzal" last="Malik">Waqar Afzal Malik</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Xiaoge" sort="Wang, Xiaoge" uniqKey="Wang X" first="Xiaoge" last="Wang">Xiaoge Wang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Xinlei" sort="Wang, Xinlei" uniqKey="Wang X" first="Xinlei" last="Wang">Xinlei Wang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Shu, Na" sort="Shu, Na" uniqKey="Shu N" first="Na" last="Shu">Na Shu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Cui, Ruifeng" sort="Cui, Ruifeng" uniqKey="Cui R" first="Ruifeng" last="Cui">Ruifeng Cui</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Xiugui" sort="Chen, Xiugui" uniqKey="Chen X" first="Xiugui" last="Chen">Xiugui Chen</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Delong" sort="Wang, Delong" uniqKey="Wang D" first="Delong" last="Wang">Delong Wang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Lu, Xuke" sort="Lu, Xuke" uniqKey="Lu X" first="Xuke" last="Lu">Xuke Lu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Yin, Zujun" sort="Yin, Zujun" uniqKey="Yin Z" first="Zujun" last="Yin">Zujun Yin</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Junjuan" sort="Wang, Junjuan" uniqKey="Wang J" first="Junjuan" last="Wang">Junjuan Wang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Ye, Wuwei" sort="Ye, Wuwei" uniqKey="Ye W" first="Wuwei" last="Ye">Wuwei Ye</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China. Electronic address: yew158@163.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2020">2020</date><idno type="RBID">pubmed:32145231</idno><idno type="pmid">32145231</idno><idno type="doi">10.1016/j.ijbiomac.2020.03.021</idno><idno type="wicri:Area/Main/Corpus">000073</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000073</idno><idno type="wicri:Area/Main/Curation">000073</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000073</idno><idno type="wicri:Area/Main/Exploration">000073</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genome-wide expression analysis suggests glutaredoxin genes response to various stresses in cotton.</title><author><name sortKey="Malik, Waqar Afzal" sort="Malik, Waqar Afzal" uniqKey="Malik W" first="Waqar Afzal" last="Malik">Waqar Afzal Malik</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Xiaoge" sort="Wang, Xiaoge" uniqKey="Wang X" first="Xiaoge" last="Wang">Xiaoge Wang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Xinlei" sort="Wang, Xinlei" uniqKey="Wang X" first="Xinlei" last="Wang">Xinlei Wang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Shu, Na" sort="Shu, Na" uniqKey="Shu N" first="Na" last="Shu">Na Shu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Cui, Ruifeng" sort="Cui, Ruifeng" uniqKey="Cui R" first="Ruifeng" last="Cui">Ruifeng Cui</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Xiugui" sort="Chen, Xiugui" uniqKey="Chen X" first="Xiugui" last="Chen">Xiugui Chen</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Delong" sort="Wang, Delong" uniqKey="Wang D" first="Delong" last="Wang">Delong Wang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Lu, Xuke" sort="Lu, Xuke" uniqKey="Lu X" first="Xuke" last="Lu">Xuke Lu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Yin, Zujun" sort="Yin, Zujun" uniqKey="Yin Z" first="Zujun" last="Yin">Zujun Yin</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Junjuan" sort="Wang, Junjuan" uniqKey="Wang J" first="Junjuan" last="Wang">Junjuan Wang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author><author><name sortKey="Ye, Wuwei" sort="Ye, Wuwei" uniqKey="Ye W" first="Wuwei" last="Ye">Wuwei Ye</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China. Electronic address: yew158@163.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan</wicri:regionArea><wicri:noRegion>Henan</wicri:noRegion></affiliation></author></analytic><series><title level="j">International journal of biological macromolecules</title><idno type="eISSN">1879-0003</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Oxidative stress reflects an imbalance between the systemic manifestation of reactive oxygen species (ROS) and a biological system's ability to readily detoxify the reactive intermediates or to repair the resulting damage. Glutaredoxins (GRXs) are ubiquitous oxidoreductase enzymes involved in diverse cellular processes and play a key role in oxidative stress responsive mechanisms. This study was aimed to explore the structure-function relationship and to provide a framework for functional validation and biochemical characterization of various GRX members. In this study, our analysis revealed the presence of 127 genes encoding GRX proteins in G. hirsutum. A total of 758 genes from two typical monocot and nine dicot species were naturally divided into four classes based on phylogenetic analysis. The classification was supported with organization of conserved protein motifs and sequence logos comparison between cotton, rice and Arabidopsis. Cotton GRX gene family has underwent strong purifying selection with limited functional divergence. A good collinearity was observed in the synteny analysis of four Gossypium species. Majority of cotton GRXs were influenced by various phytohormones and abiotic stress conditions during expression analysis, suggesting an important role of GRX proteins in response to oxidative stress. Cis-regulatory elements, gene enrichments and co-expression network analysis also support their predicted role against various abiotic stresses. Whole genome and segmental duplication were determined to be the two major impetuses for the expansion of gene numbers during the evolution. The identification of GRX genes showing differential expression in specific tissues or in response to environmental stimuli provides a new avenue for in-depth characterization of selected genes of importance. This study will further broaden our insights into the evolution and functional elucidation of GRX gene family in cotton.</div></front></TEI><pubmed><MedlineCitation Status="In-Process" Owner="NLM"><PMID Version="1">32145231</PMID><DateRevised><Year>2020</Year><Month>05</Month><Day>12</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1879-0003</ISSN><JournalIssue CitedMedium="Internet"><Volume>153</Volume><PubDate><Year>2020</Year><Month>Jun</Month><Day>15</Day></PubDate></JournalIssue><Title>International journal of biological macromolecules</Title><ISOAbbreviation>Int J Biol Macromol</ISOAbbreviation></Journal><ArticleTitle>Genome-wide expression analysis suggests glutaredoxin genes response to various stresses in cotton.</ArticleTitle><Pagination><MedlinePgn>470-491</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0141-8130(20)30984-3</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.ijbiomac.2020.03.021</ELocationID><Abstract><AbstractText>Oxidative stress reflects an imbalance between the systemic manifestation of reactive oxygen species (ROS) and a biological system's ability to readily detoxify the reactive intermediates or to repair the resulting damage. Glutaredoxins (GRXs) are ubiquitous oxidoreductase enzymes involved in diverse cellular processes and play a key role in oxidative stress responsive mechanisms. This study was aimed to explore the structure-function relationship and to provide a framework for functional validation and biochemical characterization of various GRX members. In this study, our analysis revealed the presence of 127 genes encoding GRX proteins in G. hirsutum. A total of 758 genes from two typical monocot and nine dicot species were naturally divided into four classes based on phylogenetic analysis. The classification was supported with organization of conserved protein motifs and sequence logos comparison between cotton, rice and Arabidopsis. Cotton GRX gene family has underwent strong purifying selection with limited functional divergence. A good collinearity was observed in the synteny analysis of four Gossypium species. Majority of cotton GRXs were influenced by various phytohormones and abiotic stress conditions during expression analysis, suggesting an important role of GRX proteins in response to oxidative stress. Cis-regulatory elements, gene enrichments and co-expression network analysis also support their predicted role against various abiotic stresses. Whole genome and segmental duplication were determined to be the two major impetuses for the expansion of gene numbers during the evolution. The identification of GRX genes showing differential expression in specific tissues or in response to environmental stimuli provides a new avenue for in-depth characterization of selected genes of importance. This study will further broaden our insights into the evolution and functional elucidation of GRX gene family in cotton.</AbstractText><CopyrightInformation>Copyright © 2020 The Authors. Published by Elsevier B.V. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Malik</LastName><ForeName>Waqar Afzal</ForeName><Initials>WA</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Xiaoge</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Xinlei</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shu</LastName><ForeName>Na</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cui</LastName><ForeName>Ruifeng</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Xiugui</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Delong</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lu</LastName><ForeName>Xuke</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yin</LastName><ForeName>Zujun</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Junjuan</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ye</LastName><ForeName>Wuwei</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Cotton Biology/Key Laboratory for Cotton Genetic Improvement, Ministry of Agriculture/Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, Henan, China. Electronic address: yew158@163.com.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>03</Month><Day>05</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Int J Biol Macromol</MedlineTA><NlmUniqueID>7909578</NlmUniqueID><ISSNLinking>0141-8130</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Collinearity</Keyword><Keyword MajorTopicYN="N">Conserved motifs</Keyword><Keyword MajorTopicYN="N">Differential expression</Keyword><Keyword MajorTopicYN="N">GhGRX</Keyword><Keyword MajorTopicYN="N">Oxidative stress</Keyword><Keyword MajorTopicYN="N">Oxidoreductase enzymes</Keyword><Keyword MajorTopicYN="N">Phylogenetic analysis</Keyword><Keyword MajorTopicYN="N">Selection pressure</Keyword><Keyword MajorTopicYN="N">Sequence logos</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>01</Month><Day>31</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2020</Year><Month>02</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>03</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>3</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>3</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>3</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32145231</ArticleId><ArticleId IdType="pii">S0141-8130(20)30984-3</ArticleId><ArticleId IdType="doi">10.1016/j.ijbiomac.2020.03.021</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Malik, Waqar Afzal" sort="Malik, Waqar Afzal" uniqKey="Malik W" first="Waqar Afzal" last="Malik">Waqar Afzal Malik</name></noRegion><name sortKey="Chen, Xiugui" sort="Chen, Xiugui" uniqKey="Chen X" first="Xiugui" last="Chen">Xiugui Chen</name><name sortKey="Cui, Ruifeng" sort="Cui, Ruifeng" uniqKey="Cui R" first="Ruifeng" last="Cui">Ruifeng Cui</name><name sortKey="Lu, Xuke" sort="Lu, Xuke" uniqKey="Lu X" first="Xuke" last="Lu">Xuke Lu</name><name sortKey="Shu, Na" sort="Shu, Na" uniqKey="Shu N" first="Na" last="Shu">Na Shu</name><name sortKey="Wang, Delong" sort="Wang, Delong" uniqKey="Wang D" first="Delong" last="Wang">Delong Wang</name><name sortKey="Wang, Junjuan" sort="Wang, Junjuan" uniqKey="Wang J" first="Junjuan" last="Wang">Junjuan Wang</name><name sortKey="Wang, Xiaoge" sort="Wang, Xiaoge" uniqKey="Wang X" first="Xiaoge" last="Wang">Xiaoge Wang</name><name sortKey="Wang, Xinlei" sort="Wang, Xinlei" uniqKey="Wang X" first="Xinlei" last="Wang">Xinlei Wang</name><name sortKey="Ye, Wuwei" sort="Ye, Wuwei" uniqKey="Ye W" first="Wuwei" last="Ye">Wuwei Ye</name><name sortKey="Yin, Zujun" sort="Yin, Zujun" uniqKey="Yin Z" first="Zujun" last="Yin">Zujun Yin</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/GlutaredoxinV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000073 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000073 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= GlutaredoxinV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:32145231
|texte= Genome-wide expression analysis suggests glutaredoxin genes response to various stresses in cotton.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:32145231" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a GlutaredoxinV1
| This area was generated with Dilib version V0.6.37. |  |